Faculty

Mario Affatigato
Fran Allison and Francis Halpin Professor of Physics
B.A., Coe College
Ph.D., Vanderbilt University
Email: maffatig@coe.edu
Dr. Affatigato’s personal research interests lie in the area of the optical and electrical properties of glasses and the relationship between such properties and the structure of the glass.
Affatigato’s research groups primarily work on the use of laser light in the manufacture and study of glasses. In one project, for instance, laser light is used to melt a glass bead while it is being levitated by a gas. In another, Raman spectroscopy is used to look at changes in the structure of glasses. In a third project, student researchers look at the molecules that come off a glass as it is hit by UV laser light. Dr. Affatigato and his students also work on projects such as development of glass that kills bacteria, or developing conducting glasses that can be used in particle detectors. Mario and his students also map the surface topography of glasses using atomic force microscopy.
RECENT PUBLICATIONS:
- "Structural and optical properties of cerium oxide doped barium bismuth borate glasses," Journal of Non-Crystalline Solids 499 1 (2018).
- "Structural and optical properties of rare-earths doped barium bismuth borate glasses," Journal of Non-Crystalline Solids, 481 1 (2017).
- “Control of self-powdering phenomenon in ferroelastic β′-Gd2(MoO4)3 crystallization in boro-tellurite glasses”, Journal of Non-Crystalline Solids, 501 1 (2017).
- “Long Afterglow In Hexagonal SrAl2O4:Eu2+, Dy3+ Synthesized By Crystallization Of Glass And Solidification Of Supercooled Melts,” Journal of Luminescence 177 (2016).
- “Measurements of the Rate Capability of Various Resistive Plate Chambers,” Journal of Instrumentation, 10 10 (2015).
- “Electronically Conductive Vanadate Glasses for Resistive Plate Chamber Particle Detectors,” International Journal of Applied Glass Science, 1 8 (2015).

Ugur Akgun
B. D. Silliman Professor of Physics
B.S., Middle East Technical University
Ph.D., University of Iowa
Email: uakgun@coe.edu
Ugur's research area expands from experimental high energy physics to computational biophysics. He is involved in Compact Muon Solenoid (CMS) experiment at the Large Hadron Collider (LHC) of CERN, in Geneva, Switzerland. Ugur is also member of SELEX and MIPP experiments at Fermi National Laboratory, in Batavia, Illinois. His main expertise is on radiation hard particle detectors. His recent projects include novel glass detectors, such as neutron detectors for homeland security, 3 dimensional dosimeters, and proton imaging detector. Ugur’s group develop the novel materials, design and perform the simulations of these detectors.
Ugur's secondary research area is computational biophysics. His group use various molecular dynamics simulation techniques to determine the mechanisms of membrane proteins. Ugur and his students are recently simulating P-Glycoproteins, Urea and Ammonia channels, and AQP0-CaM system.
RECENT PUBLICATIONS:
- “Development of a dosimeter prototype with machine learning-based 3-D dose reconstruction capabilities”, Biomed. Phys. Eng. Express 8, 015009 (2022)
- “Proton Imaging with Machine Learning”, Proc. SPIE 11595, Medical Imaging 2021: Physics of Medical Imaging, 1159551, https://doi.org/10.1117/12.2580618, (2021).
- “Human RhCG Ammonia Conduction Mechanism”, Computational Molecular Bioscience, 10, 81-94, (2020).
- "A glass neutron detector with machine learning Capabilities," Journal of Instrumentation, JINST_021P_0319, (2019).
- "Use of machine learning in CARNA proton imager,” Proceedings of the Medical Imaging 2019: Physics of Medical Imaging (2019).
- "CARNA – A compact glass proton imager," Proceedings of the 2017 IEEE Nuclear Science Symposium and Medical Imaging Conference, DOI: 10.1109/NSSMIC.2017.8533076 (2018).
- "Radiation hard elastomer scintillators for a new generation of particle detectors," Journal of Instrumentation 12 (2017).
- “High-density scintillating glasses for a proton imaging detector,” Journal of Optical Materials, 68 58 (2017).

Firdevs Duru
Associate Professor of Physics, Chair
B.S., Bosphorus University
M.S., Ph.D., University of Iowa
Email: fduru@coe.edu
Firdevs’ main research interest is the ionosphere around the planets. Dr. Duru’s group analyzes the data coming from the spacecrafts Mars Express, MAVEN, Juno and Cassini.
RECENT PUBLICATIONS:
- “Discriminating the Muon Noise at the PMT Windows in Calorimeters”, JINST 15 T06002, Journal of Instrumentation, (2020).
- "Electron Density Profiles in the Upper Ionosphere of Mars From 11 Years of MARSIS Data: Variability Due to Seasons, Solar Cycle, and Crustal Magnetic Fields," Journal of Geophysical Research: Space Physics 124 4 (2019).
- "Radiation Shielding Capabilities of Glasses with Potential Applications in Spacecraft and Laboratories," APS March Meeting 63 1 (2018).
- "Response of the Martian ionosphere to solar activity including SEPs and ICMEs in a two-week period starting on 25 February 2015," Planetary and Space Science 145 1 (2017).
- Book Chapter “Solar wind interaction and atmospheric escape” for the The Atmosphere and Climate of Mars (2017).
- “Post Situ Neutron and Gamma Radiation Damage Tests on Different Quartz Types,” Journal of Instrumentation 11 (2016).
- "Night Side Ionosphere of Mars Studied with Local Electron Densities: A General Overview and Electron Density Depressions", Journal of Geophysical Research-Space Physics 116 (2011).
- "Ion Energization and Escape on Mars and Venus," Space Science Reviews 162 (2011).
- "The induced magnetospheres of Mars, Venus, and Titan," Space Science Reviews 162 1-4 (2011).

James Cottingham
Professor of Physics, Emeritus
B.A., M.S., University of Chicago
M.S., Ph.D., University of Iowa
James Cottingham performs research on musical acoustics. His specialty is free-reed instruments, including several from around the world, especially from Southeast Asia.
RECENT PUBLICATIONS:
- "Initial transients in free reed instruments: A survey of experimental results," The Journal of the Acoustical Society of America 145 1676 (2019).
- "High frequency cavity modes of a Helmholtz resonator excited by an air jet," The Journal of the Acoustical Society of America 145 1709 (2018).
- "The Technical Committee on Musical Acoustics: Diverse membership with a common interest," The Journal of the Acoustical Society of America 143 1733 (2018).
- "The barbershop sound: The characteristic timbre of the male barbershop quartet," The Journal of the Acoustical Society of America 143 1843 (2018).
- "Early history of the accordion family: Where did all the accordions come from?," The Journal of the Acoustical Society of America 142 1570 (2017).

Xiang Li
Assistant Professor of Engineering Physics
B.S., Northeastern University (Shenyang, China)
M.S., Rochester Institute of Technology
Ph.D., West Virginia University
Email: xili@coe.edu
Xiang Li is a trained biomedical engineer working at the interface of biotechnology, physics, chemistry, material science and biology.
@IUB: 1) Biosensor integrated acoustofluidics: a contact-free platform to trap or manipulate biologicals and microfluidic flow with surface acoustic waves. This method can address challenges in bio-manufacturing, point-of-care testing devices, and tissue engineering. 2) Brain organoid systems: 3D human brain organoids are 3D in vitro brain-like cultures derived from human iPSCs. He is developing and engineering human brain organoid-on-a-chip systems to study neural disorders such as multiple sclerosis (MS), Alzheimer's disease (AD) and aging/disease-related neuroinflammation.
@UPitt: 1) Human tissue chips for liver disease modeling: exploring and developing layered glass/plastic chips with vascular and hepatic components which is also integrated with pH and oxygen sensor. The goal of this project is to culture human hepatocytes and all the supporting non-parenchymal cells (either primary or iPSCs-derived) on a bio-printed ECM layer to mimic the composition, structure, and function of the native liver. 2) The integration of multiple human organ chips (liver, pancreas islets, and white fat tissue) to recapitulate the biologically relevant heterogeneity of Non-Alcoholic Fatty Liver Disease (NAFLD), Type-2 diabetes (T2D), and metastatic melanoma.
@PennState and WVU: Microfluidic-based microvessel: by culturing primary human endothelial cells under a more physiologically realistic environment, his goal is to bridge the gap between in vivo and in vitro studies in the field of microvascular-related research. This approach serves as a perfect tool for providing insights into clinical issues, as it can be used to investigate the effects of normal or pathologically altered blood components on endothelial cell signaling and functions. He is also interested in the recapitulation of vascular microenvironments to study the interaction between endothelial cells, extracellular matrix and perivascular cells.
RECENT PUBLICATIONS:
- "Extracellular vesicle-based point-of-care testing for diagnosis and monitoring of Alzheimer’s disease," Microsyst Nanoeng 11, 65 (2025).
- "Engineering human midbrain organoid microphysiological systems to model prenatal PFOS exposure," Science of The Total Environment, Volume 947 (2024).
- "Acoustic metamaterials-driven transdermal drug delivery for rapid and on-demand management of acute disease," Nat Commun 14, 869 (2023).
- "Acoustofluidic assembly of primary tumor-derived organotypic cell clusters for rapid evaluation of cancer immunotherapy," J Nanobiotechnol 21, 40 (2023).
- "Understanding immune‐driven brain aging by human brain organoid microphysiological analysis platform," Platform. Adv. Sci., 9, 2200475 (2022).

James Wetzel
Adjunct Assistant Professor of Physics
B.S., Ph.D., University of Iowa
James Wetzel is currently affiliated with both CERN and Fermi National Accelerator Laboratory where he is actively involved in the field of experimental particle physics. His main interest is in the design, simulation, construction, and finally testing of detectors, in particular hadronic and electromagnetic calorimeters.
He has a passion for space and astronomy and has brought that to Coe by designing a general education astronomy course with lab component, which he loves to teach!
RECENT PUBLICATIONS:
-
“Brightness and uniformity measurements of plastic scintillator tiles at the CERN H2 test beam”, Journal of Instrumentation 13 (2018).
-
“Using LEDs to Stimulate the Recovery of Radiation Damage to Plastic Scintillators”, Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms 395, 15 (2017).
-
“Liquid Scintillator Tiles for Calorimetry”, Journal of Instrumentation 11 (2016).
-
“Search for heavy Majorana neutrinos in e±e±+jets and e±μ±+jets events in proton-proton collisions at √s = 8 TeV”, Journal of High Energy Physics 04 (2016).
-
“Radiation Damage and Recovery Properties of Common Plastics PEN and PET Using a 137Cs Gamma Ray Source Up To 1.4 MRad and 14 MRad”, Journal of Instrumentation 11 (2016).
-
"Characterization of photomultiplier tubes in a novel secondary ionization mode for Secondary Emission Ionization Calorimetry”, Journal of Instrumentation 11 (2016).

Jacob Wheaton
Assistant Professor of Glass Science
B.S., Ph.D., Iowa State University
Email: jwheaton@coe.edu
Jacob’s background is in materials science and engineering, with a focus on glass science and engineering. He is interested in studying the physical properties of glass, particularly the crystallization and viscosity behavior of phosphate glasses, and the ionic conduction properties of glasses as well. Jacob is working to continue collaborations from his previous work, particularly with the University of Rennes in Rennes, France.
During his Ph.D. work, Jacob worked to develop thin film oxy-sulfide glasses for use in solid-state batteries. He developed a thin film drawing process similar to that used to create the ultra-thin glass used in many cell phone screens. With this, Jacob was able to synthesize highly ionically conductive lithium glasses at thicknesses near 50 μm. This required extensive knowledge of the crystallization and viscosity behavior of the glass chemistry. Jacob’s research at Coe is to take a deeper dive into crystallization and viscosity behavior of glasses that have minimal research into them, such as phosphates and borates.
RECENT PUBLICATIONS:
- “Impact of impurities on the thermal properties of a Li2S-SiS2-LiPO3 glass,” International Journal of Applied Glass Science, 15 3 (2024)
- “Optimized thin film processing of sodium mixed oxy-sulfide-nitride glassy solid electrolytes for all-solid-state batteries,” ACS Applied Energy Materials, 6 11 (2023)
- “Glassy solid-state electrolytes for all-solid-state batteries,” Bulletin of the American Ceramics Society, 102 1 (2023)
- “Grain‐boundary‐free glassy solid electrolytes based on sulfide materials: effects of oxygen and nitrogen doping on electrochemical performance” Batteries and Supercaps, 5 11 (2022)
- “Electrochemical behavior of drawn thin-film vitreous lithium metaphosphate,” ACS Applied Energy Materials, 10 4 (2021)
